rs48047142 SNP Detail

Summary

• ID
  rs48047142
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117041106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTGACAA GCCTGAAGAC CTGAGTTTGA TCTTCTGGAC
  CTACATGGTA GGAGAATGAA CTCCCCAAAG CCTCCACAAA TGTGCCATGG CATGCACCAC
  G
  TACACACACA CACATACTAA ATAAACAAGT TAAATGTAGT TACATTAAAA ACAAGAATAG
  TGCCAGGCTT GGTGGCACAT GCCTTTAATC CCAGCACTC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147286085	ENSMUSSNP2844333	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48047142					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117041106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	982 bp distal
Kif2c	kinesin family member 2C	1285 bp upstream
Rr398412	regulatory region 398412	1102 bp downstream
Tssr42965	transcription start site region 42965	1306 bp upstream
Tssr42966	transcription start site region 42966	1273 bp upstream
Tssr42967	transcription start site region 42967	958 bp upstream