rs48047936 SNP Detail

Summary

• ID
  rs48047936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153061035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAAGCGCT TCAGCTAAGA GACAGAGAAA CCCCCGCACT
  AGGTGTCATC ATAGTTGACA GGACACATAC ACACGAAAAA CAGTCGCTAA GTTCTCGCAG
  R
  TTTTGTTTAT ATGACCTTAA CTCCTCAGGA CATGACAGCC ACCGGGTGCT CTCGGTAGGA
  GTAAATGTTA CTTGAAGTTT GAGTCCAATA AATACCTGGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60822414	NES16493717	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48047936					SNP	A	A	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822414	NES16493717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153061035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	481 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Tssr14250	transcription start site region 14250	722 bp downstream
Tssr14251	transcription start site region 14251	782 bp downstream
Tssr14252	transcription start site region 14252	813 bp downstream
Tssr14253	transcription start site region 14253	836 bp downstream
Tssr14254	transcription start site region 14254	853 bp downstream