rs48047966 SNP Detail

Summary

• ID
  rs48047966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121304670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCG CTCAAGAACT GGAAGGTCCT
  Y
  CTGTCTGACA GTTGTTTCTT TTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147387271	ENSMUSSNP1621956	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320483282	CHEV_2_121299925	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48047966					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121304670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12161	CpG island 12161	33 bp distal
Gm75774	predicted gene, 75774	within coordinates
Mfap1b	microfibrillar-associated protein 1B	166 bp upstream
Rr563831	regulatory region 563831	1104 bp distal
Rr563832	regulatory region 563832	976 bp distal
Rr563833	regulatory region 563833	90 bp distal
Rr563834	regulatory region 563834	within coordinates
Tssr25938	transcription start site region 25938	152 bp upstream
Tssr25939	transcription start site region 25939	141 bp upstream