rs48048272 SNP Detail

Summary

• ID
  rs48048272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30213819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA GGCAACAAGG AATCATGGGA
  R
  TTACAGGCAG AGGGGACATG GCAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148681145	ENSMUSSNP2619610	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A		G
ss322134952	CHEV_7_31299413	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48048272					SNP	G	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30213819 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	728 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	992 bp downstream
Tssr2186	transcription start site region 2186	835 bp upstream
Tssr65778	transcription start site region 65778	751 bp upstream