rs48048431 SNP Detail

Summary

• ID
  rs48048431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:130538468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTTCAT GTTCCCCATC
  TCATTGGTTT ATGTAGTATT TAATTAACTG CAATTACTGC AACTACATAA GCACAACTAA
  TTCTTGGTAC ATTAATGGGA GCAAAAGCAC ACGAACAATC ACTTAGCTAG AAGTGCCTGC
  TCAGCAATTT ATTGGAAGGC TTCACAGAGA GAAGAGAGAA TGTTGATGGT TGAGAAGAAG
  R
  TGTTGTGGCC TTGGCTTCTT TCTGGTACCT GTATATACAT GTGTCAGTGT AGTTTGTATT
  TTGAGATTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT GCCTATGTAT
  ATATGCATGT GTGTGCAGGT GCCTGTGGAG GCCAGAAGAG GGCACCAGAT CCTTAGACTT
  GGAGGTATAG GTTGTGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60841586	NES16009677	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48048431					SNP	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60841586	NES16009677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:130538468 () rs orientation: forward

Symbol	Name	Function Class
Caln1	calneuron 1	within coordinates
Tssr49069	transcription start site region 49069	1528 bp downstream