rs48049445 SNP Detail

Summary

• ID
  rs48049445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32426895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTTCTA ATTTATTCTT
  TTCTCTCATG ATGAAGCCCT CCCTCCATAG TCTTCTAGCT TACGGTGAGA TTGCCTGGGT
  CCATCTACAC AGAAATTGAT ATTCTATTGT ATTCTGACAG AAATTATTCA AATTTCACAT
  TATGTGTTCT CAGAATTACC AAGAGAACTA GCTATGAATA CAGTGGTTGC AACGTAATTC
  Y
  TTCATGAGGA GACAGGAAGC TAGTGATTGT CTATGTAATC TTGTTCTGAG AGGAAGTATG
  CTTTTCTAGG AAAACGATTT TCTCTTTATA AGGCTGCCAT CATTTTGGTA CATGGAAAAC
  TGATTCATGG TCACCGTTTT TATTTTTGCC ATCAGCCTAC TGTGTAGAGT GTGCACTTTA
  GTATAGGAAA GCAAGTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52371655	NES15392159	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48049445					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52371655	NES15392159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32426895 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	1893 bp upstream
Cpgi4541	CpG island 4541	1536 bp proximal
Rr403262	regulatory region 403262	1563 bp upstream
Rr464758	regulatory region 464758	1318 bp proximal
Tssr113128	transcription start site region 113128	1796 bp upstream
Tssr113129	transcription start site region 113129	1868 bp upstream
Tssr113130	transcription start site region 113130	1976 bp upstream