rs48049628 SNP Detail

Summary

• ID
  rs48049628
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42861761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATTAAC TGTTAGAAAG
  ACATCGGCAG CCTTTAAAAG TGAACTTGGT AGAGAGATGA AGTCAGGAAG GAGTAGATGA
  AATGAGAGAC AGGGAATAGG AAGTAAAGAA ATGGGAATTC TGGGGTACCA AGAGTTCCAT
  AGGAAGGACA AACTGAATCA CAGAGACGGT GGGAGAGGCA GAGGAAGAGG TAGGCCAAGA
  K
  TAACCATGAC TATGTGAAGG CAGGAGACCT GTGGGGAGAG ACTGGTGATC CCAGAGTGGG
  GTGGATATGA AATGAGTAAG AACAACGTCT GCAGTACAGA GAAGAGCTTG CAGAGCCTGG
  GGTGGGAGTG CAGAGGGCAT GAAGCCACAT TGAGCTGGTC TTTGTACCGA GGAGGTCAGG
  TTGCCCACCT ACAGGAGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61781883	NES17715484	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48049628					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61781883	NES17715484	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42861761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5506	CpG island 5506	1369 bp proximal
Phactr1	phosphatase and actin regulator 1	within coordinates
Rr478185	regulatory region 478185	770 bp proximal
Rr478186	regulatory region 478186	1654 bp proximal
Tssr119461	transcription start site region 119461	1043 bp upstream
Tssr119462	transcription start site region 119462	1197 bp upstream
Tssr119463	transcription start site region 119463	1365 bp upstream