rs48049649 SNP Detail

Summary

• ID
  rs48049649
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:28312848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGTCATCCTC GTCCCATCTG GAAATTTGCA CATGTTTCTT
  CTTTCTTCAC ATTTCCAATA ACTCTTCCTA TCTCAAGCCA CCTTTCCTGA GTTAATGCAA
  M
  AATAGCCTCA CCCTCACTTC CTGATAAGAA ATCAGACCAA CAGGTGTCTG AGAAGATCTG
  AGGAGGATAC CACTGAGCAG CAGGGACAGA GGACCTGGGA C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136237831	ENSMUSSNP268100	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48049649					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:28312848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21517	CpG island 21517	1302 bp proximal
Opcml	opioid binding protein/cell adhesion molecule-like	within coordinates
Rr206121	regulatory region 206121	1352 bp proximal
Tssr84179	transcription start site region 84179	1743 bp upstream
Tssr84180	transcription start site region 84180	1928 bp upstream
Tssr84181	transcription start site region 84181	1961 bp upstream
Tssr84182	transcription start site region 84182	1986 bp upstream