rs48049663 SNP Detail

Summary

• ID
  rs48049663
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65844157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAGGAACA GCTTCTGGGG TCCTACACGA TCCGAGGGGG
  CCTGGCACTA AATGTCATGT GATGTGTTCT TCGGTGTGAA AAGGCTTCTG GCTGTGCGCT
  K
  GACTTTAATC TTCCGTTTGG GACACTTGAT TCGATTGCCT TAACAAAGGA GGTTTTTCCC
  CAGGAGTAAG ACGGCTGTCA GGCTTTTCAA GAAAGTTCTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60417506	NES15922114	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48049663					SNP	T	T	T	G	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417506	NES15922114	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65844157 () rs orientation: forward

Symbol	Name	Function Class
Rr68053	regulatory region 68053	1244 bp proximal
Rr76051	regulatory region 76051	1252 bp distal
Rr76052	regulatory region 76052	98 bp distal
Rr81263	regulatory region 81263	1506 bp proximal