rs48049944 SNP Detail

Summary

• ID
  rs48049944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16455333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGCTTG AGCCTCCACC
  AAGATTCCCC AGTGTGACCC TGGAGACCTG CACAACTAGA AGTCACATGA ACCAGAGCCC
  TAGGGACTGG GTAGAGCTTG AGATCTGGAT GTCAATCAGA GAGATGCATG AGCTGTAAAA
  ATTAAAAATA AATAAAACCT CAATGATTTT GCAGAGAATG CTGGGGAGCT GGGACAGTTG
  Y
  CCTCTCCCGT GTCACAGGCA GTGGGAGGAA TGGGTAAGCA GTTTTGGAGG AGGAGAGTTG
  TCTGAGGGGC CCAGGTGGTC AGGACTCACT TCCTGATCGA GTGGTTGTTC CCAGGTGCAA
  AAGGGGGAGA GAAATGCAGA ACTTCAGAAA TAGGGCAAAT GGCAGCCATT CAGGCTATGG
  AGACCCAATA AAGTAAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148394894	ENSMUSSNP4810689	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48049944					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16455333 () rs orientation: forward

Symbol	Name	Function Class
Ceacam9	CEA cell adhesion molecule 9	521 bp upstream
Gm5586	predicted gene 5586	1498 bp upstream
Tssr64618	transcription start site region 64618	546 bp upstream
Tssr70767	transcription start site region 70767	1468 bp upstream