rs48050005 SNP Detail

Summary

• ID
  rs48050005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59652583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAACCTCTA GATTCCTTCT CCCCCTACCC CATCTTCCAA
  ATACCAGAAT TCATGGAAAA ATTCAACTCC CCGCTTCCCC CCACCTTCCA TTATCAAAGG
  Y
  CTTGGAAGAT AAGAGGAAGA AACCTGCACA AACAAGTCTC CTTTTTCTCC CCGTTCCCTA
  CTGTGACACT GCAGGAAAGG AGGGGTAAAG ATACTCAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144685545	ENSMUSSNP1257586	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48050005					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59652583 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	1473 bp proximal
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	829 bp upstream
Rr647544	regulatory region 647544	339 bp proximal
Rr647545	regulatory region 647545	840 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr66968	transcription start site region 66968	854 bp upstream
Tssr66969	transcription start site region 66969	1586 bp upstream
Tssr72702	transcription start site region 72702	148 bp downstream
Tssr72703	transcription start site region 72703	226 bp downstream
Tssr72704	transcription start site region 72704	303 bp downstream
Tssr72705	transcription start site region 72705	329 bp downstream
Tssr72706	transcription start site region 72706	1131 bp downstream