rs48050247 SNP Detail

Summary

• ID
  rs48050247
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:18293025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCAATA ATAAAAGAAC
  TTCTGGTGGA ATCACCATCC CTGACCTCAA GCTGTACTAC AGAGCAATTG TGATAAAAAC
  TACATGGTAT TGGTACAGTG ACAAGCAGGT AGCTCAATGG AATAGAACTG AAGTTTTAAA
  AAAACTGAGT AGAAGTAATT ACACTATTTT TTGCATAAAC AAGAAAAATA GTTGTCCTAT
  S
  TTAAGTTGTC TGAAATATGT CAAGACTATC TGTTCACTCT TCTCCATGAA AATGTTTCCT
  TGTTGAAACT AATCTAAAGT CAGACTAATG AAATTAATGG GATAGAAAGG AGAGCACACC
  GTTCAACCCA TGAAGCTCAA GACAGTAAAT TTGTCTTCTG TTTCTCCTGT AGTAGGCAAC
  AAAGGAGACA TTCTTTCTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60702811	NES16337142	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48050247					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60702811	NES16337142	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:18293025 () rs orientation: forward

Symbol	Name	Function Class
Defb44-ps	defensin beta 44, pseudogene	within coordinates
Gm71262	predicted gene, 71262	within coordinates
Tssr11066	transcription start site region 11066	769 bp downstream
Tssr11067	transcription start site region 11067	802 bp downstream