rs48050719 SNP Detail

Summary

• ID
  rs48050719
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATGTTT GCGTTTCTGC
  AAACCAGTGA ATCTAAAACA CAACAAGAGC TCTTGATGTG TAACAGGCAA GATGGATGCT
  GCCATCCTCT GAGGGTCAAA CACGCATAAA TTTCCTGTAA AATTGAGGGA GGGCATATAG
  AGAGCCTTGA ACTTGGGGTG AACTTTGAGA TTCTGTTTAG TTACGTTTAG CATTATCGAG
  M
  TCACTAATGC ATTGTGCCAT GTGTCTAACA AGGCCTACTT AGAGATTCCA AGGCACCATG
  GGAAGGATAA GCCTTGTAAG AGGATCGGGC TCCTGTCCTC ATGCCTCACC GCCTCCCTCG
  GAGACACATG GTCACTCAAT ACTAAATAGA CGCAAAGGCG GTGCCCCCCA TTTGCTGGCA
  AGACAGCAGC AGCCATACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132681551	ENSMUSSNP5067477	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss323821029	CHEV_11_96406538	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48050719					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436050 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1151 bp proximal
Rr252638	regulatory region 252638	1451 bp distal
Rr252639	regulatory region 252639	552 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	501 bp downstream
Tssr104544	transcription start site region 104544	149 bp upstream
Tssr104545	transcription start site region 104545	202 bp upstream
Tssr104546	transcription start site region 104546	210 bp upstream
Tssr104547	transcription start site region 104547	252 bp upstream
Tssr104548	transcription start site region 104548	346 bp upstream
Tssr104549	transcription start site region 104549	359 bp upstream
Tssr104550	transcription start site region 104550	417 bp upstream
Tssr104551	transcription start site region 104551	445 bp upstream
Tssr104552	transcription start site region 104552	466 bp upstream
Tssr104553	transcription start site region 104553	1803 bp upstream