rs48051732 SNP Detail

Summary

• ID
  rs48051732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136149749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCGCATACT CTAATTCATG TAATCCCTTA ACAGCTAAGG
  TAGATGCTAT CATCTCCGTG TAACGGGAAA CCCAGCCTTA GCCCATCCAC TTTTGTCAAT
  Y
  TCCCAAAAGG GCTGCTGCTG CTGAAGAATT CACACCCGGA CAGTCTGGCG AAAGCCTGTG
  CCCTAAGCAA CCCATGCTCC TTGAATGGCT CTCCTATCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145554263	ENSMUSSNP1623504	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48051732					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136149749 () rs orientation: forward

Symbol	Name	Function Class
Gm26568	predicted gene, 26568	within coordinates
Inava	innate immunity activator	within coordinates
Tssr229	transcription start site region 229	1619 bp upstream
Tssr9051	transcription start site region 9051	1277 bp downstream