rs48053088 SNP Detail

Summary

• ID
  rs48053088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAACAC AGAAGTGATC
  TATGTACTGA TAGATAGATA AGCTAGACCC AAGGATGTAG AAAGAACAGG ATGACATAGT
  GACCATTAAA GTCTCTTTAT ACAGACATCT GCTTTCTACC TGTTCCTTCA TATCAATTCT
  CATGAGCAAG ACAGATGTGC AAGACAGATG TGAAAAGGAG AATCCCTTTC TTCTTGTTGC
  R
  TTTGTTAGAG AATTGATCTG TACAGTCTAA AAAGAGGTCT TTCAGGTTAT GGCAAGACCA
  TCAGACAATG CTGTGGACTT TTAGCAATGG GAACAAGTCA TTTTACTTAT GTCCCAGTAA
  TACATACATG TGCAGTCCTT CTGATGCCTG ATAGATATTT TCTTATGTTG GATTTTGGTT
  GTTATTACAT TCACTCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936902	NES16189354	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48053088					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936902	NES16189354	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260254 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	515 bp downstream
Tssr58809	transcription start site region 58809	97 bp upstream
Tssr58810	transcription start site region 58810	123 bp upstream
Tssr58811	transcription start site region 58811	159 bp upstream
Tssr63019	transcription start site region 63019	1723 bp upstream
Tssr63020	transcription start site region 63020	791 bp upstream
Tssr63021	transcription start site region 63021	713 bp upstream
Tssr63022	transcription start site region 63022	674 bp upstream
Tssr63023	transcription start site region 63023	619 bp upstream
Tssr63024	transcription start site region 63024	521 bp upstream
Tssr63025	transcription start site region 63025	489 bp upstream
Tssr63026	transcription start site region 63026	468 bp upstream
Tssr63027	transcription start site region 63027	430 bp upstream
Tssr63028	transcription start site region 63028	405 bp upstream
Tssr63029	transcription start site region 63029	377 bp upstream
Tssr63030	transcription start site region 63030	321 bp upstream
Tssr63031	transcription start site region 63031	291 bp upstream
Tssr63032	transcription start site region 63032	260 bp upstream
Tssr63033	transcription start site region 63033	246 bp upstream
Tssr63034	transcription start site region 63034	220 bp upstream
Tssr63035	transcription start site region 63035	205 bp upstream
Tssr63036	transcription start site region 63036	138 bp upstream
Tssr63037	transcription start site region 63037	105 bp upstream
Tssr63038	transcription start site region 63038	80 bp upstream
Tssr63039	transcription start site region 63039	12 bp upstream
Tssr63040	transcription start site region 63040	21 bp downstream
Tssr63041	transcription start site region 63041	70 bp downstream
Tssr63042	transcription start site region 63042	95 bp downstream
Tssr63043	transcription start site region 63043	105 bp downstream
Tssr63044	transcription start site region 63044	127 bp downstream
Tssr63045	transcription start site region 63045	218 bp downstream
Tssr63046	transcription start site region 63046	237 bp downstream
Tssr63047	transcription start site region 63047	260 bp downstream
Tssr63048	transcription start site region 63048	288 bp downstream
Tssr63049	transcription start site region 63049	303 bp downstream
Tssr63050	transcription start site region 63050	327 bp downstream
Tssr63051	transcription start site region 63051	379 bp downstream
Tssr63052	transcription start site region 63052	1892 bp downstream