rs48054300 SNP Detail

Summary

• ID
  rs48054300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4296105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGCCCTG GGTCCATCCT
  TCACGGTGCT GTCTGCTGTA CTCTCAGTAC CTTACCTCCA AGGCCACCTC TGTGCAAGGC
  AGCCCGCCCT CACCTCCGGG CGTGGCCGCT CCCAGAGCTC TCTCCTTCTT ACCACTCCCC
  ACAATTCAGC ACAGGGCAGG GCCAATCCCG TTTTCACCCT TCCTTGTTCC TGGAGCCTCG
  R
  GTAAGAAATA AAATATGCTC ACTAGGTAAA TGATGATAGA GCCTTTTGTT TTTAAACATT
  CTTTTTTTTT TTTTAAGATT TATTTATTAT TATATGTAGC TGTCTTCAGA CACACCGAAG
  AGGGAGTCAG ATCTTGTTAC GGATGGTTGT GAGCCACCAT GTGGTTTTTC AACATTCTTA
  AGAGTATGGT AGCAATGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61338484	NES16941057	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48054300					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61338484	NES16941057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4296105 () rs orientation: forward

Symbol	Name	Function Class
4921501I09Rik	RIKEN cDNA 4921501I09 gene	within coordinates
Ncoa1	nuclear receptor coactivator 1	1257 bp downstream
Rr260536	regulatory region 260536	1505 bp distal
Rr263521	regulatory region 263521	within coordinates