rs48054665 SNP Detail

Summary

• ID
  rs48054665
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTGCCTC TGCCACCCAA
  GTGCTGAGAC TAAATTAATG CATGCGATAC CAAGTCTGGC AAGATAAAAG AAGTATTTTT
  TTAAAGTAGT TTAATCCGGG GGGGGCGGGG GGAGTGACAC ACAGCCCTCA GGAGGCAGAG
  GCAGGCAGTT TTCTATGAGT TCGAGGCCAG TCTGGTCTAC ATACCAAGTT CCAGGACAGG
  S
  AGAGCACCAC ACATTATTTA AAAAAAAAAA AAAAAAAAAA GCGTAAATCC GTTTCCCAGA
  GCCTCAGCAT TCTCTTTGGA CAGAATGTGT CTACATTCAA GCTTACTGTT CTGTCTTCTG
  AGACAGAGTT ACTATGTAAC CTTTGCAGGC CTCAAACTCT AGATCCTGCT GCCTCAATTT
  CCCAAGTGCC AGGTTGTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147738257	ENSMUSSNP2908368	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
ss323532327	CHEV_10_127649374	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48054665					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	264 bp distal
Cpgi2388	CpG island 2388	761 bp proximal
Rr224447	regulatory region 224447	within coordinates
Rr224448	regulatory region 224448	413 bp proximal
Rr402345	regulatory region 402345	307 bp downstream
Rr402346	regulatory region 402346	486 bp upstream
Spryd4	SPRY domain containing 4	524 bp upstream
Tssr99849	transcription start site region 99849	543 bp upstream
Tssr99850	transcription start site region 99850	495 bp upstream