rs48057436 SNP Detail

Summary

• ID
  rs48057436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35019379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCAAAT AAACAAACAA
  ACAGATGGTT GTGAACCACT GGGAATTGAA CTCAGGAAGA GCAGTCAGTG CTCTTAATCA
  CTGAGCCATC GCTCCAGCCC CTTCCTTTAA TTTTTGAGAA GCTCATAACA ATGCAACAAA
  GCAGCAATGC CCGCTGATCA TAGCCACTCC CAATGAAGCC TTTCTTACCG CCCTTGTTGG
  Y
  TTACAGACAA CTCTATGTCC CTCCCAACAG TGACCTAGCA ATAGCTTGCT GTCAAGGACT
  ACTCCCTACC CACACCCCTC CTCTCTCTCT CAATCTCAAT CTCTCTCTCT CCCTACCCCC
  ATTCCTACCC CCGTTTTTTC CTCCTTTTCT CTCTCTCCCT TTCCTCACCA ATGTTCCCAC
  ATGGCCTCTC TGTCCTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60993436	NES16128304	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48057436					SNP	C	C	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993436	NES16128304	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35019379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	1350 bp distal
Gpatch1	G patch domain containing 1	1514 bp upstream
Rr645358	regulatory region 645358	1505 bp distal
Rr645359	regulatory region 645359	1243 bp distal
Rr645360	regulatory region 645360	within coordinates
Tssr72030	transcription start site region 72030	1517 bp upstream