rs48058689 SNP Detail

Summary

• ID
  rs48058689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:92585803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCATGT GTGACAGGAC
  AAGCTCTTCA GTTACTATTT TCTCTGTTAG TCCGATATCT TAGTTCCCAG ACAGGTATCC
  TCAAAGTCAC AACCATCAAA CTGCCATACC CTGCCGTGAT CTCCCAACTG TAAATTCTTG
  AGTTTAGAAA CATTTAGAAA CATTCCAAGG AACTGAATGT GGGGTTGTTT CTGTGGTATG
  R
  CAAAGGAATG CAGCACACTG CAATATACAT TTGCCAGGGC GATATGAATT GCAATTGTCA
  GAAACCTCTT CTCCTAAGCA GAACCCATGT CTGTCCTATA AACACATTGA CTTGCTGACA
  TTGTCCAAGG AACGGTAGAT GAGGCAAGCC TAAACTAGGT CAGTATTTGG TTTTACTATG
  AGAATTGGCC TTTTAATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60909748	NES16210510	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48058689					SNP	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60909748	NES16210510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:92585803 () rs orientation: forward

Symbol	Name	Function Class
D6Mit284	DNA segment, Chr 6, Massachusetts Institute of Technology 284	1372 bp distal
Prickle2	prickle planar cell polarity protein 2	within coordinates