rs48058956 SNP Detail

Summary

• ID
  rs48058956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41494712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTTGGA ATAGCCTCAT
  TGTGCACACG GAGTGGAAGG TGAAGGAAAC TGTTTGCGAT TTCTTTTTTT TTTTTTAAGC
  ATTTATCGCA ATTTGACTCA TTTTAATCCA AACTGCAGTC AAGAAAGCAT TTTGTATCAG
  AACGCTGAAC TGAGAAGTGT GTAACAACTG TGCTGTGTCT TTTGTTGAAA CCTCCTGTGC
  R
  GCTGTAATTT AACTATTACT TGGCAGCATT TGGTGGAATG TGCTTCAAAG CTTACAGTTC
  TGTAAGTGAT TGCCCGTGAG TTTATATAAA ATAATTAACG ATTCCCCACC CCATTTCAGC
  CAATGCGTAT GTATAGCTAT GTAGAAATTA TGGCAGTACA ACAGTTTAAC TCATGGGCAA
  TATATATACT CACATCATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386147	NES16764677	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48058956					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386147	NES16764677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41494712 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	564 bp downstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1414 bp downstream
Rr677063	regulatory region 677063	1951 bp distal
Rr677064	regulatory region 677064	1803 bp distal
Rr677065	regulatory region 677065	1404 bp distal
Rr677066	regulatory region 677066	1277 bp distal
Rr677067	regulatory region 677067	696 bp distal
Rr677068	regulatory region 677068	within coordinates
Rr677069	regulatory region 677069	1372 bp proximal
Tssr84527	transcription start site region 84527	1412 bp downstream
Tssr84528	transcription start site region 84528	374 bp downstream
Tssr84529	transcription start site region 84529	995 bp upstream
Tssr84530	transcription start site region 84530	1975 bp upstream