rs48059409 SNP Detail

Summary

• ID
  rs48059409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42456267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAAAGCCC TGGAATGTGT CTGATCGTTT GGAATGAACA
  AAATCGAGCA GATAAACTGC GCGGCGATGC TGTGTTGGGC CAGAGGGAGG TGTCAAGTCC
  Y
  ACAGCAAGCT GTGCTGCCCA AAGATTCTGA ATTCTGAACC CACGGGGTAC TTTCCCTGGG
  TTCCCTGAGC AGCTGTACCT TCTCTTCCGT CAGTGGCAAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52629856	NES15518732	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48059409					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629856	NES15518732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42456267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	785 bp distal
D13Mit138	DNA segment, Chr 13, Massachusetts Institute of Technology 138	1843 bp distal
Edn1	endothelin 1	within coordinates
Gm47118	predicted gene, 47118	within coordinates
Gm60910	predicted gene, 60910	1114 bp upstream
Rr388326	regulatory region 388326	764 bp downstream
Rr478144	regulatory region 478144	1449 bp distal
Rr478146	regulatory region 478146	1305 bp distal
Rr478147	regulatory region 478147	137 bp distal
Rr478148	regulatory region 478148	936 bp proximal
Tssr119437	transcription start site region 119437	1510 bp downstream
Tssr119438	transcription start site region 119438	1356 bp downstream
Tssr119439	transcription start site region 119439	1300 bp downstream
Tssr119440	transcription start site region 119440	1273 bp downstream
Tssr119441	transcription start site region 119441	1165 bp downstream
Tssr119442	transcription start site region 119442	978 bp downstream
Tssr119443	transcription start site region 119443	957 bp downstream
Tssr119444	transcription start site region 119444	824 bp downstream