rs48060884 SNP Detail

Summary

• ID
  rs48060884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88116846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAATGAA GGTTTTAGAG
  CACAAAGCAA TAAATAACTC CAGCAAGTAA CACAATAGGA GTGTTGTAAT TTTGTTCATT
  ATATGTAAAA TTCAGTTTCA ATTTCAGAAA TTGGATAGCA ACTATTGCCA AGTTTAATGA
  ATAAAACATA TCCAAGAGAT TGGCATGAAA TTTACATACT TTAGGAGAGA ATCATTTTTA
  Y
  TTTTTATTTC CCTGTATTTT AAACATAATT TTTTCAGATA TTGAGCCAAT CACAATCCTG
  TCCTTAACAA AACAACAGTC TATAAGGCAA GAGTCTATTA ATGCATGAAA ACTAGTAAAC
  CATAACATCG TAAAATGCCA CTTTGGTGTA TGAAATTTTG TTAAGGACAG AGAACGGAAC
  AATTTTTAAA GAGGTAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194218	NES16700745	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48060884					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194218	NES16700745	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88116846 () rs orientation: forward

Symbol	Name	Function Class
1700066N21Rik	RIKEN cDNA 1700066N21 gene	within coordinates
2310003L06Rik	RIKEN cDNA 2310003L06 gene	472 bp upstream
Gm28434	predicted gene 28434	530 bp upstream
Rr378253	regulatory region 378253	within coordinates
Tssr46962	transcription start site region 46962	468 bp upstream