rs48062155 SNP Detail

Summary

• ID
  rs48062155
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48812472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGAGCCA TGCAAAGGAC
  CTTACACTAT TCAAAGAAGC AGGCCTTCAA ACAGTTATTA AAAATGATTA TTATACTCTG
  ACATCTCATG TCTTTATCTA GGAACTGAAT TAAAAATGTG TATTAATTGT GTGAAACAAA
  AGGTCAAGGC AAGACAGAGG GAAACTATTC AAATTATCAA GACCTCTACT TTTAACACAG
  W
  TATGAATTCT GTAAAATGGA AAGAAAAGTC TTAAGTACAT TTCAAAAGTG AAAGGTGAAT
  TTTATGGATT GACCAATAAC AATTTTATGG ACTGACCAAT AACGATAGCT AAATTTTAGA
  ACTTGATGGT TGGTAAAGGA AACAGAATAG TCATGTACCT CTTATTAATA GGTATTAATT
  AATAGGTATT CTAGATATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60458512	NES16448032	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	A	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48062155					SNP	T	T	T	T	A	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458512	NES16448032	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48812472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8305	CpG island 8305	1386 bp proximal
Dzip3	DAZ interacting protein 3, zinc finger	within coordinates
Rr391755	regulatory region 391755	1230 bp upstream
Rr516660	regulatory region 516660	1622 bp distal
Rr516661	regulatory region 516661	312 bp proximal
Rr516662	regulatory region 516662	1822 bp proximal
Tssr141318	transcription start site region 141318	1822 bp downstream
Tssr141319	transcription start site region 141319	1972 bp downstream