rs48064347 SNP Detail

Summary

• ID
  rs48064347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTAGCCC ATACTCTGGT
  GCTGTTCCTA GTTCCTGACC CCTACCCCTG GGTCCCTGGG TGCGGGTCCC TGCGGTGCCA
  GAGACACCTG CCTGCCAGAA ATCCACAATC TCACTAAATT CTTCTAGGCC AACTTTTTTC
  ACCTTAGGAA AATTATTCCT GTGTGTTCGA TAGGCCTGCA ATATATCTTC AATCCTTTAA
  Y
  CTAAAAAAAG TTAAAGGCCT TATTAATTTG AAGAAGATGA TGATGATGAT AATAATAACA
  ATAATATTTT ATGAGTTCTG TGATGTATTT CTGATTTTCC GTGTTGTTGA GGATCTGGCT
  ACTCGTTTAA AACTAATTAT CATGTAATTT TAGTATATTG CTTTAGTATT ACCCTTACCT
  CATAGGTACC CTACATGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393745617	MGP_WTSI_15_40488080	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48064347					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393745617	MGP_WTSI_15_40488080	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	308 bp distal
Gm63080	predicted gene, 63080	382 bp upstream
Rr406269	regulatory region 406269	1332 bp proximal
Rr501588	regulatory region 501588	1489 bp distal
Rr501589	regulatory region 501589	926 bp distal
Rr501590	regulatory region 501590	425 bp distal
Rr501591	regulatory region 501591	957 bp proximal
Tssr4586	transcription start site region 4586	1232 bp downstream
Tssr131170	transcription start site region 131170	1643 bp downstream
Tssr131171	transcription start site region 131171	1613 bp downstream
Tssr131172	transcription start site region 131172	1530 bp downstream
Tssr131173	transcription start site region 131173	1480 bp downstream
Tssr131174	transcription start site region 131174	1452 bp downstream
Tssr131175	transcription start site region 131175	1309 bp downstream
Tssr131176	transcription start site region 131176	1268 bp downstream
Tssr131177	transcription start site region 131177	1213 bp downstream
Tssr131178	transcription start site region 131178	1177 bp downstream
Tssr131179	transcription start site region 131179	1652 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates