rs48064384 SNP Detail

Summary

• ID
  rs48064384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171486955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGC TCCCAGAAAT AAGACTCAGA
  Y
  TCAAAATATA TTTACAATAC CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120001849	PARCsnp_1.15002	PARC_SEQ	INBRED	f	SNP		C	T
ss120004145	PARCsnp_1.04341	PARC_SEQ	INBRED	f	SNP		C	T
ss146171807	ENSMUSSNP1915456	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320120217	CHEV_1_173589518	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48064384					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171486955 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	906 bp downstream
Rr423376	regulatory region 423376	421 bp distal
Rr423377	regulatory region 423377	459 bp distal