rs48065088 SNP Detail

Summary

• ID
  rs48065088
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167438070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT CCAGCCTGGC GAGCAGGTTC
  A
  TGGGATCAGG GGGTGTAGCA GGTGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148264331	ENSMUSSNP4343284	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs48065088					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167438070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12750	CpG island 12750	1153 bp proximal
Gm11476	predicted gene 11476	within coordinates
Rr40706	regulatory region 40706	1270 bp distal
Rr56117	regulatory region 56117	within coordinates
Rr56118	regulatory region 56118	730 bp proximal
Rr374233	regulatory region 374233	within coordinates