rs48065201 SNP Detail

Summary

• ID
  rs48065201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43877557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGGAATTT CAGAGAGCAG
  ATCCTTATCA GCTTTTGAGA CCGCTATTAT GGGGATAATT AGCTATTAGT GCCTAGACGA
  AGAGCAGCGG ACTCAGGGCT CAAGGGTTTC TGTGGGGTAA AGTGTGATAA AAAACAGGTG
  GCAGGATATT GGGCTGCAAA AAAGAAGGCA ATAAAAAGAA GTGGAAGAAT AAATCATGTG
  R
  AAGAAGAGTC ATCAGAGTAT CTGGGAAGGC ATATTTTCAT AAGGCAAGAG GGCAGTCATA
  AACCAGGCGT GGTGACACAC ACTTTTAATC CCAGCACTCG GGAGGCAGAG GCAGGAGGAT
  TTCTGAGTTT GAGGCCAGCC TGGTCTACAG AATAAGTTCC AGGACAGCCA GGGCTACACA
  GAGAAACCCT GTCTCGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62747699	NES17340481	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48065201					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747699	NES17340481	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43877557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	1657 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	1452 bp upstream
Rr527121	regulatory region 527121	1113 bp proximal
Rr527122	regulatory region 527122	1614 bp proximal
Tssr144685	transcription start site region 144685	1321 bp upstream
Tssr144686	transcription start site region 144686	1430 bp upstream
Tssr144687	transcription start site region 144687	1486 bp upstream
Tssr144688	transcription start site region 144688	1624 bp upstream
Tssr144689	transcription start site region 144689	1781 bp upstream
Tssr144690	transcription start site region 144690	1816 bp upstream
Tssr144691	transcription start site region 144691	1836 bp upstream
Tssr144692	transcription start site region 144692	1892 bp upstream
Tssr144693	transcription start site region 144693	1940 bp upstream
Tssr144694	transcription start site region 144694	1975 bp upstream
Tssr148130	transcription start site region 148130	1838 bp downstream