rs48065552 SNP Detail

Summary

• ID
  rs48065552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14621138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTCTGGA ATCAGCTACC
  CGGTCCTGGA AAGGAGTGGG CAGGAGTACA GTTAAGGGAA GTAGAGTCTA GCTTTCCTTG
  CTGCCTGTTA GAATTCTGAT GAGTTGCTAT GGTTGGAGGT AGAGTCTGGG ATTAGGAGAC
  AGGAACATCT GGGATAGTGG CCTGTGTGTA CTTATGAGCC AGCAGGAAAC TGGAAACGGG
  Y
  ATCTAATACT CCCATGGAAC TAACAGTGAA TAGGGAGAAA GGAGGAAGAT GAGTCCACTG
  GGGACCGACA GCAACTGTCC ACGGCCAGGA GGGAATGAAT GAGGAAATGG AGGTACACGG
  AGGCCATTAC AAAGTAGGAA GGAAGGCTGG AGAAACCCCC CCCCCCCCCC GATTCTGGGC
  AAGGAGGGAC TTCGGCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60541451	NES16554294	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48065552					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60541451	NES16554294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14621138 () rs orientation: forward

Symbol	Name	Function Class
4930474M22Rik	RIKEN cDNA 4930474M22 gene	1934 bp upstream
Rr522524	regulatory region 522524	1903 bp distal
Rr522525	regulatory region 522525	154 bp proximal
Smoc2	SPARC related modular calcium binding 2	within coordinates
Tssr5014	transcription start site region 5014	1924 bp upstream
Tssr142738	transcription start site region 142738	1840 bp downstream
Tssr142739	transcription start site region 142739	1630 bp downstream
Tssr142740	transcription start site region 142740	1604 bp downstream
Tssr146495	transcription start site region 146495	1935 bp upstream