rs48067455 SNP Detail

Summary

• ID
  rs48067455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15077016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG CATGCTGTGG ACCAGACACA
  Y
  TTAACCTCAG TTCTCCAAAG GAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148695723	ENSMUSSNP4101826	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss322517332	CHEV_8_15027016	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48067455					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15077016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	232 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	685 bp distal
Rr660169	regulatory region 660169	388 bp proximal
Rr660170	regulatory region 660170	1159 bp proximal
Tssr76486	transcription start site region 76486	151 bp upstream
Tssr76487	transcription start site region 76487	170 bp upstream
Tssr76488	transcription start site region 76488	283 bp upstream
Tssr76489	transcription start site region 76489	366 bp upstream
Tssr76490	transcription start site region 76490	743 bp upstream
Tssr76491	transcription start site region 76491	942 bp upstream
Tssr76492	transcription start site region 76492	1738 bp upstream
Tssr80488	transcription start site region 80488	604 bp downstream