rs48067473 SNP Detail

Summary

• ID
  rs48067473
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47450371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTA GAGCCTGAGA GATGGCTCAG
  S
  GGTTATAAGC ACTGGCAGCT CTTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146465859	ENSMUSSNP4049227	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss325826246	CHEV_19_47536422	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48067473					SNP	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47450371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11031	CpG island 11031	1467 bp proximal
Rr549061	regulatory region 549061	988 bp distal
Rr549062	regulatory region 549062	1078 bp distal
Rr549063	regulatory region 549063	within coordinates
Rr549064	regulatory region 549064	98 bp proximal
Rr549065	regulatory region 549065	1235 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	1309 bp upstream
Tssr159730	transcription start site region 159730	1165 bp upstream