rs48067830 SNP Detail

Summary

• ID
  rs48067830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:82406839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGACTAG GCCTGAAATA
  ATCCAATGTT TATTTTTATA CAATTTCTCA CAGTACTACA ACATTGCAGT GACTTCCTGG
  GATGTTTCTA GTTTTTCGCA GGCCAAGAGG CCATTCTCAG AGGTAGCTCC TTCATGTAAA
  CCTAAAAATG GCACTTTCCC ACATTATAGT TATCAGGAAG TTTAAAGTTC ACTGGCCCTC
  R
  TCTCTTTTCT TTTCTGTCAC AGGGAGAGGA AAAAATATGG GGCAGTTCCA GCTTCCAGCC
  AGTCATTCCA CAGCAAGACT TTGAAACCTG GGAAAGAAGA GGGAGGCTGC AGTGTATCTT
  GGCTGGGAGA TGGCTGGACT GGGAAACAGG ACTCTCTGTC ATTCCCTGTG TCAGTCTTGG
  AGTGACCCTG ACCTCTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61858016	NES17782363	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48067830					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61858016	NES17782363	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:82406839 () rs orientation: forward

Symbol	Name	Function Class
Gm48155	predicted gene, 48155	within coordinates
Gm59879	predicted gene, 59879	within coordinates
Rr277316	regulatory region 277316	within coordinates