rs48068899 SNP Detail

Summary

• ID
  rs48068899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3765960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGCATA ATGAAGAGAT
  GAGAATTGTG GAAAAAATTC AGTATTAAAG GTAATCAGCC TGATAGAGAC CCATATTATC
  TGAACCTCCT CCTTCTTTGT GCCAATTAGT TGTCATGTCA GAGTGTAAAA CTGAGCTTCC
  ACTAATGGGG TGAGATGCAG TCATCACTTA TATTATAGAT AAAAGACAGA GGCCACTGAG
  Y
  AGTCGCTAGC CCAGTTTTGG TTCTAGCACA TCCTTCCTGG AAAGTAAATT ACAAAGTATG
  TTCCTTTGTG GGTTACAGAG ATCATTCTTT TCCAATACAG ATCTGGAGGA TAGGTTACTT
  TTTCAAACAT TTATTGATGC TCTCTCTGTG TGTGAAGAAA TCTCCAAGTC AGAGGGTAAA
  ATAGGGGGAT GCAGGAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076282	NES16052987	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48068899					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076282	NES16052987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3765960 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Gm16553	predicted gene 16553	within coordinates
Tssr80223	transcription start site region 80223	1587 bp downstream
Tssr80224	transcription start site region 80224	1602 bp downstream