rs48069270 SNP Detail

Summary

• ID
  rs48069270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75929289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTACCCC CAGGTTAACT
  GTCCACACAC AAATCTGCCA ATGGGCCTCT AGGAAAGAGT GTCCTCTGCT AATTGAATTC
  TAATGAGGCC AGGAAGTGGA TTAGAAATCG AGCTATTTTA CTGTTAGTTT CAAACACTGG
  ATATAGGGAT GTTTGGCCTA TTTGATCTGT TTAATCTTCC AGGAAGACCT AATTAATTCA
  Y
  GAAGAAATGA CTGCCCAGAA GGACTCTGCA GGTTATTGGT TGATCCCGCT GAAAGGGGAT
  TTTTCTGCGT CTTGGAGCAG CATCAGACAC AGTAGAAAGC TGCTGGTCTG GTGTGGGCTG
  ATGATCCGTG GTCATGCAGA CTTCTATGCC CACTTGATTG GGCACAACCA TGGAAGATAT
  ATTATATATG AGTACTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146770223	ENSMUSSNP5166976	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48069270					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75929289 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	1447 bp distal
Rr559648	regulatory region 559648	71 bp distal
Rr559649	regulatory region 559649	651 bp proximal