rs48069337 SNP Detail

Summary

• ID
  rs48069337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83482261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT ACACAACCCG GTCCTCCTTC
  R
  TCCACCTGAT CATTTCCTCC ACTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133348051	ENSMUSSNP3637953	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48069337					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83482261 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17605	CpG island 17605			1223 bp proximal
Dguok	deoxyguanosine kinase			Intron
				Noncoding-Transcript-Variant
Rr399724	regulatory region 399724			1598 bp upstream
Rr632884	regulatory region 632884			356 bp proximal
Rr632885	regulatory region 632885			1680 bp proximal
Tssr1908	transcription start site region 1908			1802 bp upstream
Tssr61663	transcription start site region 61663			977 bp downstream
Tssr61664	transcription start site region 61664			1537 bp downstream
Tssr61665	transcription start site region 61665			1551 bp downstream
Tssr61666	transcription start site region 61666			1559 bp downstream
Tssr61667	transcription start site region 61667			1586 bp downstream
Tssr61668	transcription start site region 61668			1610 bp downstream
Tssr61669	transcription start site region 61669			1616 bp downstream