rs48072584 SNP Detail

Summary

• ID
  rs48072584
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118173639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTGGCCC ACGGAGCGCC
  CTCAGCCTTG CAACTGTTTG CCTTCGCTCC AGCTGTTACT TCCCGGAGGA AAGCAACCTT
  TTCCAATCCA GCTCTCAGAA TGAACGCCTT AAACTCTTCT CTCCACACTA GTTGTCAGTG
  GTAAGTTTAT GTCCTTAATG TGGCGGGAAT AGGGCTGCCA ACACTTGCAT TCTGAACCAA
  K
  CCAGTGTAGA ATATACTTCT GAAAGTATAA GAAGACTCGC TGCAAACCAG ATTGGGTTTG
  CTGGGGCAGG GCCGAAGCAT CAGATTTTCA AAATATGCAG GCGATTTGGT TCTGCAACCA
  CAACTGAAAA ACCCGGTAAG CAACTACAGT ATGCAACTTG TCCATGTTTG CCCAGGAGTT
  TCCCGATCTT GAAACTGGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61231090	NES16848768	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48072584					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61231090	NES16848768	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118173639 () rs orientation: forward

Symbol	Name	Function Class
Gm33088	predicted gene, 33088	within coordinates