rs48073149 SNP Detail

Summary

• ID
  rs48073149
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96680985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACTGGTCA AATGTGGAAG AAAATAAAGG GTCCCTGGGG
  ATGTAACTTA GTTGGTAGAA TGTTTGCCTA GCCCACTGCA CAGGCCTGAA TTCAATCCTC
  A
  GTACCTTATA AATTCGGGCT GGGCTTGATG GCATTCATGT AGCCCTTGGG AGCGGAAACA
  GGACGATCAG GAGTTTAAAG CCTTGCCTGG CCACCAGGG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132687355	ENSMUSSNP2487998	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323822807	CHEV_11_96651473	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48073149					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96680985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			Intron
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			348 bp distal
Rr455508	regulatory region 455508			900 bp distal
Rr455509	regulatory region 455509			within coordinates
Rr455510	regulatory region 455510			554 bp proximal
Rr455511	regulatory region 455511			1353 bp proximal
Tssr104569	transcription start site region 104569			1013 bp downstream
Tssr104570	transcription start site region 104570			953 bp downstream
Tssr104571	transcription start site region 104571			935 bp downstream
Tssr104572	transcription start site region 104572			905 bp downstream
Tssr110346	transcription start site region 110346			1151 bp upstream