rs48075013 SNP Detail

Summary

• ID
  rs48075013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45863533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCGTAT TTGAAGTACT
  GAGAACATAG GAAGGGAGAG TGTCATCTCA GGAGGGTGCT CTCTCTGCCC CTCCGAAGGG
  ATCTGTCTCC TCCAAGGGAG GTTTCAGAAT CTTCTTGGCT CAGACAATGA AGCTACGAGG
  GGAGAAGAGC CTTGACCGTG AACATCCCAG TCCTGCATGT CCCTGAGCAC TGATATCCTG
  Y
  GTGTCAGCTG GGCACATAGG ATTGTGCCTG AGAGGCAGAG TAGGAAAGTC AGTGAGCAGA
  CCCTGTCACT GCACTGTCCC TGCCTGTCTA TCCACACAGG AGCTCCGAGA GTCCCACCCT
  AGAGACAAAA TTAATTGCTA GTCCTAGCAA TTCTGTACCT ACTCCTGCTC TCATATCCAA
  ATCTCCCCCA ATTTTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136420873	ENSMUSSNP7072938	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48075013					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45863533 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	1866 bp upstream
Gm68914	predicted gene, 68914	983 bp downstream
Rr678012	regulatory region 678012	1376 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	624 bp downstream
Tssr89293	transcription start site region 89293	1438 bp downstream