rs48076207 SNP Detail

Summary

• ID
  rs48076207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATGCTG GGGCCAGCCA
  GATGGCTCAG TGGAGAAAGG GGCTGATAAA GGAAGGTGCT TGCTGCCAAG TCTGCCCACC
  TGAGTTCAAT CCCTGGGTCT TACACGGTGG AAGGAGAGAA TCAATTTCCA TAAGTGTCCA
  TAAGTATCCA TAAGTATACT ACTGCATGTG TGTACTCTCA CGCATATAAA CACATTCAAT
  Y
  ATCCATCAAT CAATCAATGT GAAGGGATTC CTTTTCTGTT GTGGAAATGA AACACCGTAA
  CCAGAGCAAT TTGTAGAAGG CAACAATTTA TTGTGGCTTA AGATTCCAGA GGGATAAGAG
  TCCATCATTG TGAGGAGCCA GGCAGCAGGT GGCAGAAAAC CAGGAAGCTG AGACACCACA
  GCTTGAAACA CACATGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss149092893	ENSMUSSNP3342885	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322575040	CHEV_8_35169819	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48076207					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573919 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dctn6	dynactin 6			Intron
				Noncoding-Transcript-Variant
Rr400814	regulatory region 400814			1581 bp upstream
Rr661952	regulatory region 661952			138 bp proximal
Rr661953	regulatory region 661953			570 bp proximal
Rr661954	regulatory region 661954			1077 bp proximal
Rr661955	regulatory region 661955			1086 bp proximal
Rr661956	regulatory region 661956			1761 bp proximal
Tssr80889	transcription start site region 80889			997 bp downstream
Tssr80890	transcription start site region 80890			1051 bp downstream
Tssr80891	transcription start site region 80891			1678 bp downstream
Tssr80892	transcription start site region 80892			1746 bp downstream