rs48076370 SNP Detail

Summary

• ID
  rs48076370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:6736418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACACAA AGATCTTTCA
  AAGAAAAAAG AAAAAAAATA TCTTTTCCCC CCTAGTCTGA GTTACCTTCT GACCCCATAC
  TGTCAACAAA ATGCAAAGGA CCGTGGTGCC TCTCAATGTC TTGAAACAGC ATCAGACATT
  GGTACTATAA AATCCAACAA TTTTTTCCTT AGGATCTCTG GCTTTTATGT CTGAAGAAAC
  Y
  GGCCCCTAAG AAAGTTAATG GTGATTCTAA CATTCTAATA AATACTAGGT CTTAGGGATT
  TAAAAAAATG TATTGTTGTA TTTCTAATGT CTTTATGTTT CTGTATCAGG GTGTCTTCCT
  GAACCTTCTA CTTTGTTCCA CTGGTCTACT TGCCCACCTT TGTGTATCAA CACACCATGT
  TCATTAATAG CGCTTTATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60966768	NES16164387	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48076370					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60966768	NES16164387	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:6736418 () rs orientation: forward

Symbol	Name	Function Class
Tssr64457	transcription start site region 64457	702 bp upstream
Usp29	ubiquitin specific peptidase 29	within coordinates