rs48076779 SNP Detail

Summary

• ID
  rs48076779
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51372273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACTGTCA GGAACCTTTC CCCTCAGGTT CATTCTAGCC
  CCATAAGTTA CTAACACTAA ACACCTTCTT CCAACTCTAT CCAACCCCAG GACACTGCAT
  S
  CAAAGAGACC CAGGATGTAA CCTATGCCCA GTTGTGCATC AGGACACAGG AACAGAACAA
  CAGCTGAAAC CAGCAAGCAG CCAACACAGA AAGAAGACCC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52288542	NES15304620	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48076779					SNP	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288542	NES15304620	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51372273 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93280	transcription start site region 93280	1585 bp downstream
Tssr93281	transcription start site region 93281	1537 bp downstream
Tssr93282	transcription start site region 93282	1519 bp downstream
Tssr93283	transcription start site region 93283	1429 bp downstream
Tssr93284	transcription start site region 93284	1061 bp downstream
Tssr93285	transcription start site region 93285	877 bp downstream
Tssr93286	transcription start site region 93286	774 bp downstream
Tssr93287	transcription start site region 93287	390 bp downstream
Tssr93288	transcription start site region 93288	139 bp downstream
Tssr93289	transcription start site region 93289	87 bp downstream
Tssr97556	transcription start site region 97556	1666 bp upstream
Tssr97557	transcription start site region 97557	1329 bp upstream
Tssr97558	transcription start site region 97558	117 bp upstream
Tssr97559	transcription start site region 97559	314 bp downstream
Tssr97560	transcription start site region 97560	410 bp downstream