rs48076837 SNP Detail

Summary

• ID
  rs48076837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90626213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCTTCTGT GTGTCTCAGG CTGTTTCACA CACATCTCCT
  GCATCACCTG GTCACAGCCT GACAATATGG ACGCATGGAG ATGCACTCAC AGTGTCAGAG
  R
  CATCTGGAAG CTTCTACAGC CCCAACAGCA CAATGCTGCC TGCCCCCATC CCTCAGGGAG
  CACGGTTCCC TTACTGGGCC CGCATCTTCA TGCCCTGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148543075	ENSMUSSNP5308240	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48076837					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90626213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	544 bp proximal
Eva1c	eva-1 homolog C	within coordinates
Rr519212	regulatory region 519212	1430 bp distal
Rr519213	regulatory region 519213	1044 bp proximal
Tssr139312	transcription start site region 139312	756 bp upstream
Tssr139313	transcription start site region 139313	791 bp upstream
Tssr139314	transcription start site region 139314	1080 bp upstream
Tssr139315	transcription start site region 139315	1505 bp upstream
Tssr139316	transcription start site region 139316	1804 bp upstream
Tssr139317	transcription start site region 139317	1890 bp upstream