rs48077203 SNP Detail

Summary

• ID
  rs48077203
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:89801616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCAATT ACTATATGGC
  ATTCCATACA GGTTTCATGC TTTTGAATAT CATACATTAG CAGAATGTTA GCTGCCTTTT
  GTCTGGTACC TAGAGATTCT AAGACTTGTT GAGAAATGCA ATTTTTTTTT CTCACAGCAT
  TTTACATCTG GAAGGGATTC CTGGTGTTTT TTTTTTTTTT TTTTTTTTTG CCAAGAACAC
  K
  TTTTTGAGAC AAAGGACAGT GAGTGATTCA TAGAGAGTAG ATCAGTGTCT TAGTCATGCT
  CTCAGGGCAG GCAGGAGGCT GAGGGCGCAG ATAATTGTTT TTCCTTGGAA AAACATTTCC
  TCCACCATTT AAACTCTTCA CATTCATCTG ATAGCACCGT CATATTTTTG TGACTGCTTT
  AAAGATCCTG CTGCCCACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61669141	NES17625707	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48077203					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61669141	NES17625707	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:89801616 () rs orientation: forward

Symbol	Name	Function Class
Nrxn3	neurexin III	within coordinates
Rr387610	regulatory region 387610	1089 bp downstream
Tssr114574	transcription start site region 114574	10 bp downstream