rs48077289 SNP Detail

Summary

• ID
  rs48077289
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60959892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACTCAC CTCTGGTGCT
  GTGGCAGTGT ACTGTGTGCT AAGGTTCCGA CACAGCTTAA CTATATGAAT GCTGAAATCT
  TTCATATAAT GCTGTATCAC AAAATATTCT TTCTAGCCAA CTCTCTGAAA ATGTAAAGAT
  CAAGTTCATG CAAACAATCC CAGCACTTAA GAGTCCAGAA CAGTACCACA GTTCAGGGGC
  S
  AGCCTAGACA ACATAATGAG ACTTGGTCTC ATTTAAAAAA AAAAAATCAT TCTTGGTTCA
  CAGAGTCAGA TTCAACTATA AGGTTACTAT TGGCTAATCC TGCTCTAAAA ACTCACTCAC
  CTACTGGGAG TCTGTCATGG TATTTTACTA TTACTGTATC CCACACAGTA TCTGAGATAA
  ACAACAACAA CAACAACAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52343489	NES15282568	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G		G	G	G	C		C
ss323327714	CHEV_10_60586861	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48077289					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343489	NES15282568	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60959892 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1024 bp downstream
Rr228136	regulatory region 228136	1692 bp distal
Rr401931	regulatory region 401931	1978 bp downstream
Sgpl1	sphingosine phosphate lyase 1	within coordinates