rs48077778 SNP Detail

Summary

• ID
  rs48077778
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55294656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC ATAGGAATTT TCCTTCTCTT
  C
  GTTGTTTCTT GACCACCTTC ATGTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss139576748	ENSMUSSNP2149812	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324641948	CHEV_14_55676036	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48077778					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55294656 () rs orientation: forward

Symbol	Name	Function Class
Rr492411	regulatory region 492411	1696 bp distal
Rr492412	regulatory region 492412	1792 bp distal
Rr492413	regulatory region 492413	1066 bp distal
Rr492414	regulatory region 492414	1682 bp proximal
Tssr125747	transcription start site region 125747	1521 bp downstream
Tssr125748	transcription start site region 125748	1324 bp downstream