rs48078301 SNP Detail

Summary

• ID
  rs48078301
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10609435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGGCCTA CCACGACCCA
  CGACAAAATT CTATGCCCGT CTAATTTTCA CAAGGCTCCA CTTAGAGGCG AGGCGGGGTG
  TGGAGATCCG ATTTTCAGAC TTTTGGTAAC AGACAAACAG GCTACTCTGC ATCTGCAAAA
  TAAAACCCTC GCTATAATTA TAATCTAAGA CCCAATTCAC TTCCGCTCGC ATCTCCCTAC
  C
  GACTCGAAAC TTCCCTGAAG CTCTCAAAGG ACCTATTTCT ACCTGTCCCC CGGCTCCCAT
  CTCGAGCCTG CATTATTTCC TGAAATGGGA AACCCGGACA TCGCTCCCCT CGCAAGATGA
  AGACCCGGAG CCGGGATCCC CCACACTCCG CCCGGCTCAG GCCGGCTCAG CAGGAGTCTC
  CGGGGCCGCA GCCCGGCTAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146607060	ENSMUSSNP1793625	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48078301					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10609435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	within coordinates
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	within coordinates
Rr533779	regulatory region 533779	320 bp proximal
Rr533780	regulatory region 533780	664 bp proximal
Rr533781	regulatory region 533781	680 bp proximal
Rr533782	regulatory region 533782	986 bp proximal
Tssr152429	transcription start site region 152429	613 bp downstream
Tssr152430	transcription start site region 152430	689 bp downstream
Tssr152431	transcription start site region 152431	834 bp downstream
Tssr152432	transcription start site region 152432	866 bp downstream
Tssr152433	transcription start site region 152433	911 bp downstream