rs48078421 SNP Detail

Summary

• ID
  rs48078421
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166904099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCTGCT GATAACCAGG
  TAGACTTAAC TCAGGGAACG ATGGAGGGTG ACGGTGGAGG TGGGAGGACA GGACTCTGGG
  GGTGGTAAGG AGTGGAAAAA GATCCTAGGG GTGATGGGAG ATTCCAAATA CTCCGGAGAT
  GATAGGGGAA CTGAGGGACT CTGGGGGCTA TAGGGAAACT AAGAGAAAGG GGCAGGGACT
  M
  TGGGGGCTAT AGGGAAACTG AAGAAGCAGA CAGGGACTTC GGGGACTATA GGGGGGGCTG
  AGAGAAAGAG AACAGGGACT CCGGAGGCTA CAGGATAATT GAGGGAAGAG GACAGGGACT
  CCGGAGGCTA CAGGATAATT GAGGGAAGGG GACAGGGACT CCGGGGGTAT AGGGAAACTG
  AGGGAAAGGG ACAGGGACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148261068	ENSMUSSNP3994343	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48078421					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166904099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	within coordinates
Gm25878	predicted gene, 25878	1294 bp upstream
Gm56406	predicted gene, 56406	837 bp upstream
Gm75600	predicted gene, 75600	1066 bp downstream
Rr397500	regulatory region 397500	951 bp upstream
Rr570436	regulatory region 570436	1825 bp distal
Rr570437	regulatory region 570437	1617 bp distal
Rr570438	regulatory region 570438	1405 bp distal
Rr570439	regulatory region 570439	289 bp distal
Rr570440	regulatory region 570440	within coordinates
Rr570441	regulatory region 570441	826 bp proximal
Tssr21786	transcription start site region 21786	1632 bp downstream
Tssr21787	transcription start site region 21787	890 bp downstream
Tssr21788	transcription start site region 21788	877 bp downstream
Tssr21789	transcription start site region 21789	636 bp upstream
Tssr21790	transcription start site region 21790	1034 bp upstream
Tssr27734	transcription start site region 27734	1749 bp upstream
Tssr27735	transcription start site region 27735	1723 bp upstream
Tssr27736	transcription start site region 27736	1343 bp upstream
Tssr27737	transcription start site region 27737	1332 bp upstream
Tssr27738	transcription start site region 27738	1287 bp upstream
Tssr27739	transcription start site region 27739	1103 bp upstream
Tssr27740	transcription start site region 27740	379 bp downstream
Tssr27741	transcription start site region 27741	428 bp downstream
Tssr27742	transcription start site region 27742	553 bp downstream
Tssr27743	transcription start site region 27743	685 bp downstream
Tssr27744	transcription start site region 27744	802 bp downstream
Zfas1	zinc finger, NFX1-type containing 1, antisense RNA 1	755 bp upstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates