rs48078677 SNP Detail

Summary

• ID
  rs48078677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97553447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGATCCA TTGCCCTCTC
  CTGGTGTCTG AAGACATCTA CAGTGTACTC ACATATATAA AATAAATAAA TCTTAAAAAA
  ATTTAAATTG CCCTTCATTG TTCAAAGTAA TTTTCTAACA GAAAACATTG CATTTTAATG
  AGTTTTGTCT TGGTGGTAGA AAGTTACTAA AAAAAAAACA AAACAGATAT CTGATTATAA
  Y
  GTGCAAAGTT CTTTATCTTA GAAGGTCTAT GGCTTATCAT TTTTAACTAA ATACTTTACT
  TTGAGATAGT TACATCTGTA CATCCAATTC GAAGAAATGG TATGGTAACC CATGCTTTTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTGTC TGTCTCTCTC
  TGTCTCTCTC TCTCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389622572	MGP_WTSI_13_98186894	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	T	T	C	C	C	T	T	T	T	T	T	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	T	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48078677					SNP	C	C	C	C	C	T	T	T	C	C	C	T	T	T	T	T	T	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389622572	MGP_WTSI_13_98186894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97553447 () rs orientation: forward

Symbol	Name	Function Class
Rr274314	regulatory region 274314	647 bp distal
Rr277788	regulatory region 277788	354 bp proximal
Rr285518	regulatory region 285518	648 bp distal