rs48078872 SNP Detail

Summary

• ID
  rs48078872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136937885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGGCATTC TTTGTAGGAT GAAAATAAAT AAATACCTCT
  TGGGGATTTA AGCACAAATA CATTTGGAGG GGTGAACTAA GAGATCATGT TTAAGCATAT
  R
  AAAATCACTA TTGGCATTAA TGTGTTCCCC CATTTTTACA TTAGAACTGC TGGGGAGGGG
  AGTTGAAGCA AATAGCTTTA TCTTGGCACT CCTCAGTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145563682	ENSMUSSNP4022025	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48078872					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136937885 () rs orientation: forward

Symbol	Name	Function Class
Gm70790	predicted gene, 70790	within coordinates
Rr419562	regulatory region 419562	121 bp proximal
Rr419563	regulatory region 419563	227 bp proximal