rs48079215 SNP Detail

Summary

• ID
  rs48079215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134096199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCC CGGGCTTCGG CCTTCCACTG
  R
  AGCATCTGTT AAAAACAAAG CCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133771336	ENSMUSSNP809466	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321976676	CHEV_6_134069254	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48079215					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134096199 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	214 bp proximal
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	248 bp proximal
Etv6	ets variant 6	within coordinates
Rr639573	regulatory region 639573	within coordinates
Rr639574	regulatory region 639574	1302 bp proximal