rs48079588 SNP Detail

Summary

• ID
  rs48079588
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10609439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTACCAC GACCCACGAC
  AAAATTCTAT GCCCGTCTAA TTTTCACAAG GCTCCACTTA GAGGCGAGGC GGGGTGTGGA
  GATCCGATTT TCAGACTTTT GGTAACAGAC AAACAGGCTA CTCTGCATCT GCAAAATAAA
  ACCCTCGCTA TAATTATAAT CTAAGACCCA ATTCACTTCC GCTCGCATCT CCCTACCGAC
  W
  CGAAACTTCC CTGAAGCTCT CAAAGGACCT ATTTCTACCT GTCCCCCGGC TCCCATCTCG
  AGCCTGCATT ATTTCCTGAA ATGGGAAACC CGGACATCGC TCCCCTCGCA AGATGAAGAC
  CCGGAGCCGG GATCCCCCAC ACTCCGCCCG GCTCAGGCCG GCTCAGCAGG AGTCTCCGGG
  GCCGCAGCCC GGCTACTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146607064	ENSMUSSNP4146833	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss325524293	CHEV_18_10609437	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48079588					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10609439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	within coordinates
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	within coordinates
Rr533779	regulatory region 533779	316 bp proximal
Rr533780	regulatory region 533780	660 bp proximal
Rr533781	regulatory region 533781	676 bp proximal
Rr533782	regulatory region 533782	982 bp proximal
Tssr152429	transcription start site region 152429	609 bp downstream
Tssr152430	transcription start site region 152430	685 bp downstream
Tssr152431	transcription start site region 152431	830 bp downstream
Tssr152432	transcription start site region 152432	862 bp downstream
Tssr152433	transcription start site region 152433	907 bp downstream